Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 AC098859.1-201ENST00000502915 1238 ntBASIC14.9□□□□□ -0.02
UBQLN3Q9H347 SPTSSB-204ENST00000617024 1292 ntBASIC14.9□□□□□ -0.02
UBQLN3Q9H347 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.9□□□□□ -0.02
UBQLN3Q9H347 TUBB3P1-201ENST00000405796 1332 ntBASIC14.9□□□□□ -0.02
UBQLN3Q9H347 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
UBQLN3Q9H347 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 MIR648-201ENST00000385046 94 ntBASIC14.89□□□□□ -0.03
UBQLN3Q9H347 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 AC093512.1-201ENST00000617969 520 ntBASIC14.89□□□□□ -0.03
UBQLN3Q9H347 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 AC005622.1-201ENST00000636801 1703 ntBASIC14.89□□□□□ -0.03
UBQLN3Q9H347 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.89□□□□□ -0.03
UBQLN3Q9H347 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 AC126177.1-201ENST00000547829 2218 ntBASIC14.88□□□□□ -0.03
UBQLN3Q9H347 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.88□□□□□ -0.03
UBQLN3Q9H347 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 KLF2P3-201ENST00000451977 1087 ntBASIC14.88□□□□□ -0.03
UBQLN3Q9H347 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 AC018529.1-201ENST00000613063 361 ntBASIC14.88□□□□□ -0.03
UBQLN3Q9H347 MIR6080-201ENST00000617359 66 ntBASIC14.88□□□□□ -0.03
UBQLN3Q9H347 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 PRAL-201ENST00000624952 3286 ntBASIC14.88□□□□□ -0.03
UBQLN3Q9H347 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms