Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 AC006557.2-201ENST00000592985 1240 ntBASIC16.17■□□□□ 0.18
TRIM4Q9C037 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 AC012645.4-201ENST00000610691 1061 ntBASIC16.17■□□□□ 0.18
TRIM4Q9C037 AC073592.4-201ENST00000623827 446 ntBASIC16.17■□□□□ 0.18
TRIM4Q9C037 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM4Q9C037 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRIM4Q9C037 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.16■□□□□ 0.18
TRIM4Q9C037 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 KRT18P27-201ENST00000427733 1299 ntBASIC16.16■□□□□ 0.18
TRIM4Q9C037 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 AC136632.2-201ENST00000512891 861 ntBASIC16.16■□□□□ 0.18
TRIM4Q9C037 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 PGM5P2-202ENST00000637225 1043 ntBASIC16.16■□□□□ 0.18
TRIM4Q9C037 AC073347.1-201ENST00000421633 2643 ntBASIC16.16■□□□□ 0.18
TRIM4Q9C037 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 SIGLEC16-201ENST00000599858 1437 ntBASIC16.16■□□□□ 0.18
TRIM4Q9C037 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM4Q9C037 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM4Q9C037 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM4Q9C037 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM4Q9C037 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms