Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CCNA1P78396 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.1■□□□□ 0.49
CCNA1P78396 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.1■□□□□ 0.49
CCNA1P78396 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC18.1■□□□□ 0.49
CCNA1P78396 PFN1P12-201ENST00000455938 534 ntBASIC18.1■□□□□ 0.49
CCNA1P78396 FTH1P14-201ENST00000482930 551 ntBASIC18.1■□□□□ 0.49
CCNA1P78396 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC18.1■□□□□ 0.49
CCNA1P78396 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.1■□□□□ 0.49
CCNA1P78396 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCNA1P78396 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.1■□□□□ 0.49
CCNA1P78396 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC18.1■□□□□ 0.49
CCNA1P78396 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.1■□□□□ 0.49
CCNA1P78396 GPR182-203ENST00000622922 591 ntBASIC18.1■□□□□ 0.49
CCNA1P78396 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.1■□□□□ 0.49
CCNA1P78396 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CCNA1P78396 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CCNA1P78396 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.09■□□□□ 0.49
CCNA1P78396 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.09■□□□□ 0.49
CCNA1P78396 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CCNA1P78396 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC18.09■□□□□ 0.49
CCNA1P78396 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.09■□□□□ 0.49
CCNA1P78396 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
CCNA1P78396 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCNA1P78396 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.09■□□□□ 0.49
CCNA1P78396 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CCNA1P78396 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
CCNA1P78396 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CCNA1P78396 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 AC093433.1-201ENST00000458048 571 ntBASIC18.09■□□□□ 0.49
CCNA1P78396 KRT18P43-201ENST00000469825 1281 ntBASIC18.09■□□□□ 0.49
CCNA1P78396 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
CCNA1P78396 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.09■□□□□ 0.49
CCNA1P78396 AC000095.1-201ENST00000603208 874 ntBASIC18.09■□□□□ 0.49
CCNA1P78396 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.09■□□□□ 0.49
CCNA1P78396 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CCNA1P78396 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNA1P78396 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18.08■□□□□ 0.49
CCNA1P78396 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCNA1P78396 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCNA1P78396 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCNA1P78396 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCNA1P78396 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.08■□□□□ 0.49
CCNA1P78396 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.08■□□□□ 0.49
CCNA1P78396 AC106820.2-201ENST00000563775 3264 ntBASIC18.08■□□□□ 0.49
CCNA1P78396 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCNA1P78396 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
CCNA1P78396 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.08■□□□□ 0.49
CCNA1P78396 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCNA1P78396 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CCNA1P78396 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.08■□□□□ 0.48
CCNA1P78396 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.08■□□□□ 0.48
CCNA1P78396 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCNA1P78396 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCNA1P78396 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.08■□□□□ 0.48
CCNA1P78396 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCNA1P78396 BRF1-202ENST00000379932 884 ntTSL 5 BASIC18.08■□□□□ 0.48
CCNA1P78396 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCNA1P78396 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CCNA1P78396 AC245100.3-201ENST00000441281 285 ntBASIC18.08■□□□□ 0.48
CCNA1P78396 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCNA1P78396 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC18.08■□□□□ 0.48
CCNA1P78396 HNRNPUP1-201ENST00000554987 333 ntBASIC18.08■□□□□ 0.48
CCNA1P78396 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC18.08■□□□□ 0.48
CCNA1P78396 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.08■□□□□ 0.48
CCNA1P78396 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.08■□□□□ 0.48
CCNA1P78396 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC18.08■□□□□ 0.48
CCNA1P78396 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CCNA1P78396 AC010328.2-201ENST00000597698 1111 ntBASIC18.08■□□□□ 0.48
CCNA1P78396 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.08■□□□□ 0.48
CCNA1P78396 AC005252.2-201ENST00000624630 1141 ntBASIC18.08■□□□□ 0.48
CCNA1P78396 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.08■□□□□ 0.48
CCNA1P78396 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.08■□□□□ 0.48
CCNA1P78396 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCNA1P78396 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.08■□□□□ 0.48
CCNA1P78396 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCNA1P78396 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CCNA1P78396 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCNA1P78396 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCNA1P78396 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CCNA1P78396 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CCNA1P78396 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms