Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.17■□□□□ 0.02
CLK1P49759 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.17■□□□□ 0.02
CLK1P49759 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 AL591424.1-201ENST00000442569 1213 ntBASIC15.17■□□□□ 0.02
CLK1P49759 HCG4B-203ENST00000450128 991 ntBASIC15.17■□□□□ 0.02
CLK1P49759 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CLK1P49759 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.17■□□□□ 0.02
CLK1P49759 AC034105.1-201ENST00000563488 319 ntBASIC15.17■□□□□ 0.02
CLK1P49759 MIR4515-201ENST00000584082 81 ntBASIC15.17■□□□□ 0.02
CLK1P49759 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 AL645728.2-201ENST00000641974 660 ntBASIC15.17■□□□□ 0.02
CLK1P49759 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CLK1P49759 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.17■□□□□ 0.02
CLK1P49759 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.17■□□□□ 0.02
CLK1P49759 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.17■□□□□ 0.02
CLK1P49759 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 AC104109.2-201ENST00000602919 1418 ntBASIC15.17■□□□□ 0.02
CLK1P49759 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLK1P49759 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CLK1P49759 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.16■□□□□ 0.02
CLK1P49759 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 AP005117.1-202ENST00000581724 1908 ntBASIC15.16■□□□□ 0.02
CLK1P49759 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.16■□□□□ 0.02
CLK1P49759 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.16■□□□□ 0.02
CLK1P49759 RHOQP3-201ENST00000437982 621 ntBASIC15.16■□□□□ 0.02
CLK1P49759 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.16■□□□□ 0.02
CLK1P49759 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.16■□□□□ 0.02
CLK1P49759 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.16■□□□□ 0.02
CLK1P49759 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.16■□□□□ 0.02
CLK1P49759 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 AC007064.4-201ENST00000637740 555 ntBASIC15.16■□□□□ 0.02
CLK1P49759 PRAL-201ENST00000624952 3286 ntBASIC15.16■□□□□ 0.02
CLK1P49759 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLK1P49759 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.16■□□□□ 0.02
CLK1P49759 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CLK1P49759 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLK1P49759 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CLK1P49759 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms