Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PTPN4P29074 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PTPN4P29074 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
PTPN4P29074 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PTPN4P29074 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.19■□□□□ 0.18
PTPN4P29074 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PTPN4P29074 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
PTPN4P29074 REXO1L8P-201ENST00000604378 1897 ntBASIC16.18■□□□□ 0.18
PTPN4P29074 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.18■□□□□ 0.18
PTPN4P29074 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.18■□□□□ 0.18
PTPN4P29074 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.18■□□□□ 0.18
PTPN4P29074 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
PTPN4P29074 AL109954.1-202ENST00000564051 2148 ntBASIC16.18■□□□□ 0.18
PTPN4P29074 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.18■□□□□ 0.18
PTPN4P29074 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.18■□□□□ 0.18
PTPN4P29074 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PTPN4P29074 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.18■□□□□ 0.18
PTPN4P29074 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.18■□□□□ 0.18
PTPN4P29074 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
PTPN4P29074 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.18■□□□□ 0.18
PTPN4P29074 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.18■□□□□ 0.18
PTPN4P29074 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
PTPN4P29074 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN4P29074 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.18■□□□□ 0.18
PTPN4P29074 AC136621.1-201ENST00000624017 2304 ntBASIC16.18■□□□□ 0.18
PTPN4P29074 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PTPN4P29074 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.18■□□□□ 0.18
PTPN4P29074 CICP24-201ENST00000605464 2705 ntBASIC16.18■□□□□ 0.18
PTPN4P29074 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PTPN4P29074 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PTPN4P29074 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.17■□□□□ 0.18
PTPN4P29074 AL671710.1-201ENST00000610245 2349 ntBASIC16.17■□□□□ 0.18
PTPN4P29074 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN4P29074 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
PTPN4P29074 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PTPN4P29074 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.17■□□□□ 0.18
PTPN4P29074 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN4P29074 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
PTPN4P29074 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 CXCL1P1-201ENST00000502804 216 ntBASIC16.17■□□□□ 0.18
PTPN4P29074 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.17■□□□□ 0.18
PTPN4P29074 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PTPN4P29074 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN4P29074 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN4P29074 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.17■□□□□ 0.18
PTPN4P29074 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN4P29074 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN4P29074 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN4P29074 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 AC026748.1-201ENST00000624349 3251 ntBASIC16.17■□□□□ 0.18
PTPN4P29074 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN4P29074 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN4P29074 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN4P29074 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN4P29074 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
PTPN4P29074 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN4P29074 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.16■□□□□ 0.18
PTPN4P29074 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms