Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16■□□□□ 0.15
MSH3P20585 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16■□□□□ 0.15
MSH3P20585 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
MSH3P20585 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16■□□□□ 0.15
MSH3P20585 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
MSH3P20585 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
MSH3P20585 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16■□□□□ 0.15
MSH3P20585 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
MSH3P20585 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16■□□□□ 0.15
MSH3P20585 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16■□□□□ 0.15
MSH3P20585 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
MSH3P20585 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 AC007967.4-201ENST00000614700 386 ntBASIC16■□□□□ 0.15
MSH3P20585 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
MSH3P20585 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
MSH3P20585 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16■□□□□ 0.15
MSH3P20585 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
MSH3P20585 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16■□□□□ 0.15
MSH3P20585 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 AL603832.2-201ENST00000566195 2125 ntBASIC16■□□□□ 0.15
MSH3P20585 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
MSH3P20585 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
MSH3P20585 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSH3P20585 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
MSH3P20585 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.99■□□□□ 0.15
MSH3P20585 TUBB3P1-201ENST00000405796 1332 ntBASIC15.99■□□□□ 0.15
MSH3P20585 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
MSH3P20585 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
MSH3P20585 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.99■□□□□ 0.15
MSH3P20585 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.99■□□□□ 0.15
MSH3P20585 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.99■□□□□ 0.15
MSH3P20585 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.99■□□□□ 0.15
MSH3P20585 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.99■□□□□ 0.15
MSH3P20585 FAM86GP-201ENST00000448322 971 ntBASIC15.99■□□□□ 0.15
MSH3P20585 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.99■□□□□ 0.15
MSH3P20585 AL139010.1-201ENST00000454878 894 ntBASIC15.99■□□□□ 0.15
MSH3P20585 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.99■□□□□ 0.15
MSH3P20585 AC067863.1-201ENST00000494933 530 ntBASIC15.99■□□□□ 0.15
MSH3P20585 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.99■□□□□ 0.15
MSH3P20585 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.99■□□□□ 0.15
MSH3P20585 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.99■□□□□ 0.15
MSH3P20585 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.99■□□□□ 0.15
MSH3P20585 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.99■□□□□ 0.15
MSH3P20585 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.99■□□□□ 0.15
MSH3P20585 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.99■□□□□ 0.15
MSH3P20585 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.99■□□□□ 0.15
MSH3P20585 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
MSH3P20585 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
MSH3P20585 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.99■□□□□ 0.15
MSH3P20585 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.99■□□□□ 0.15
MSH3P20585 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.99■□□□□ 0.15
MSH3P20585 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
MSH3P20585 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MSH3P20585 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
MSH3P20585 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
MSH3P20585 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.98■□□□□ 0.15
MSH3P20585 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
MSH3P20585 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.98■□□□□ 0.15
MSH3P20585 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms