Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CXCL1P09341 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC12.5□□□□□ -0.41
CXCL1P09341 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC12.5□□□□□ -0.41
CXCL1P09341 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC12.5□□□□□ -0.41
CXCL1P09341 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 AC246785.2-201ENST00000432512 513 ntBASIC12.5□□□□□ -0.41
CXCL1P09341 POU5F1P6-201ENST00000466990 990 ntBASIC12.5□□□□□ -0.41
CXCL1P09341 YBX1P2-201ENST00000489612 999 ntBASIC12.5□□□□□ -0.41
CXCL1P09341 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC12.5□□□□□ -0.41
CXCL1P09341 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.5□□□□□ -0.41
CXCL1P09341 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC12.5□□□□□ -0.41
CXCL1P09341 AC013467.2-201ENST00000605472 835 ntBASIC12.5□□□□□ -0.41
CXCL1P09341 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
CXCL1P09341 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.5□□□□□ -0.41
CXCL1P09341 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CXCL1P09341 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 AC089987.1-201ENST00000551654 2209 ntBASIC12.49□□□□□ -0.41
CXCL1P09341 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 AC105250.1-201ENST00000509378 2057 ntBASIC12.49□□□□□ -0.41
CXCL1P09341 AL031731.1-201ENST00000642131 2094 ntBASIC12.49□□□□□ -0.41
CXCL1P09341 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 BX640514.1-201ENST00000583223 1918 ntBASIC12.49□□□□□ -0.41
CXCL1P09341 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.49□□□□□ -0.41
CXCL1P09341 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CXCL1P09341 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CXCL1P09341 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 MEG3-211ENST00000452514 461 ntTSL 3 BASIC12.49□□□□□ -0.41
CXCL1P09341 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC12.49□□□□□ -0.41
CXCL1P09341 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC12.49□□□□□ -0.41
CXCL1P09341 RNF126P1-202ENST00000569893 925 ntBASIC12.49□□□□□ -0.41
CXCL1P09341 AC005336.2-201ENST00000593183 939 ntBASIC12.49□□□□□ -0.41
CXCL1P09341 AD001527.2-201ENST00000622994 785 ntBASIC12.49□□□□□ -0.41
CXCL1P09341 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms