Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HMGB3O15347 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HMGB3O15347 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 GATAD2A-201ENST00000358713 5510 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 AC006486.2-201ENST00000624246 2199 ntBASIC12.98□□□□□ -0.33
HMGB3O15347 ATP2B2-202ENST00000360273 8962 ntTSL 5 BASIC12.98□□□□□ -0.33
HMGB3O15347 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.98□□□□□ -0.33
HMGB3O15347 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC12.98□□□□□ -0.33
HMGB3O15347 PCDHGA9-201ENST00000573521 4605 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
HMGB3O15347 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 PCGF3-213ENST00000620529 1899 ntBASIC12.98□□□□□ -0.33
HMGB3O15347 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 ACTG1P4-201ENST00000425123 1122 ntBASIC12.98□□□□□ -0.33
HMGB3O15347 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC12.98□□□□□ -0.33
HMGB3O15347 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC12.98□□□□□ -0.33
HMGB3O15347 DENND3-207ENST00000518347 850 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC12.98□□□□□ -0.33
HMGB3O15347 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 DUT-205ENST00000558813 769 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC12.98□□□□□ -0.33
HMGB3O15347 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
HMGB3O15347 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
HMGB3O15347 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
HMGB3O15347 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 CACNA1C-219ENST00000399649 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 AC026748.1-201ENST00000624349 3251 ntBASIC12.98□□□□□ -0.33
HMGB3O15347 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HMGB3O15347 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HMGB3O15347 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
HMGB3O15347 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.97□□□□□ -0.33
HMGB3O15347 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC12.97□□□□□ -0.33
HMGB3O15347 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.97□□□□□ -0.33
HMGB3O15347 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 AC243591.1-201ENST00000452967 1364 ntBASIC12.97□□□□□ -0.33
HMGB3O15347 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.97□□□□□ -0.33
HMGB3O15347 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
HMGB3O15347 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC12.97□□□□□ -0.33
HMGB3O15347 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.97□□□□□ -0.33
HMGB3O15347 PEX5L-208ENST00000467460 9082 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.97□□□□□ -0.33
HMGB3O15347 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
HMGB3O15347 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC12.97□□□□□ -0.33
HMGB3O15347 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 AC112907.2-201ENST00000448639 330 ntBASIC12.97□□□□□ -0.33
HMGB3O15347 SIGLEC30P-201ENST00000455569 941 ntBASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms