Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TRIM49D1C9J1S8 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM49D1C9J1S8 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM49D1C9J1S8 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms