Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH9Q9HC56 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 PRYP6-201ENST00000514804 343 ntBASIC16.6■□□□□ 0.25
PCDH9Q9HC56 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 AC136621.1-201ENST00000624017 2304 ntBASIC16.6■□□□□ 0.25
PCDH9Q9HC56 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH9Q9HC56 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 AC211486.1-202ENST00000416371 468 ntBASIC16.59■□□□□ 0.25
PCDH9Q9HC56 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 AC211476.1-201ENST00000503899 468 ntBASIC16.59■□□□□ 0.25
PCDH9Q9HC56 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 AC079140.1-201ENST00000508039 487 ntBASIC16.59■□□□□ 0.25
PCDH9Q9HC56 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 AL138918.1-201ENST00000568306 659 ntBASIC16.59■□□□□ 0.25
PCDH9Q9HC56 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 CICP13-201ENST00000422015 2789 ntBASIC16.59■□□□□ 0.25
PCDH9Q9HC56 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms