Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 LINC01225-203ENST00000563550 1244 ntBASIC18.36■□□□□ 0.53
USP28Q96RU2 AC024267.1-201ENST00000582320 895 ntBASIC18.36■□□□□ 0.53
USP28Q96RU2 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP28Q96RU2 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.36■□□□□ 0.53
USP28Q96RU2 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP28Q96RU2 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.36■□□□□ 0.53
USP28Q96RU2 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.36■□□□□ 0.53
USP28Q96RU2 AC138035.3-201ENST00000622706 2791 ntBASIC18.36■□□□□ 0.53
USP28Q96RU2 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
USP28Q96RU2 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.35■□□□□ 0.53
USP28Q96RU2 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
USP28Q96RU2 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 SPCS2P4-201ENST00000436160 681 ntBASIC18.35■□□□□ 0.53
USP28Q96RU2 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.35■□□□□ 0.53
USP28Q96RU2 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.35■□□□□ 0.53
USP28Q96RU2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.35■□□□□ 0.53
USP28Q96RU2 AC243562.2-201ENST00000561247 970 ntBASIC18.35■□□□□ 0.53
USP28Q96RU2 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.35■□□□□ 0.53
USP28Q96RU2 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.35■□□□□ 0.53
USP28Q96RU2 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.35■□□□□ 0.53
USP28Q96RU2 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.35■□□□□ 0.53
USP28Q96RU2 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
USP28Q96RU2 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
USP28Q96RU2 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.35■□□□□ 0.53
USP28Q96RU2 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
USP28Q96RU2 REXO1L1P-202ENST00000608646 1974 ntBASIC18.35■□□□□ 0.53
USP28Q96RU2 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP28Q96RU2 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.35■□□□□ 0.53
USP28Q96RU2 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.34■□□□□ 0.53
USP28Q96RU2 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.34■□□□□ 0.53
USP28Q96RU2 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.34■□□□□ 0.53
USP28Q96RU2 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
USP28Q96RU2 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 MIR346-201ENST00000362234 95 ntBASIC18.34■□□□□ 0.53
USP28Q96RU2 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.34■□□□□ 0.53
USP28Q96RU2 FAM220BP-201ENST00000377689 816 ntBASIC18.34■□□□□ 0.53
USP28Q96RU2 RPS8P6-201ENST00000426177 609 ntBASIC18.34■□□□□ 0.53
USP28Q96RU2 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.34■□□□□ 0.53
USP28Q96RU2 AP000842.3-202ENST00000569238 1080 ntBASIC18.34■□□□□ 0.53
USP28Q96RU2 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 MIR4313-201ENST00000580760 101 ntBASIC18.34■□□□□ 0.53
USP28Q96RU2 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.34■□□□□ 0.53
USP28Q96RU2 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.34■□□□□ 0.53
USP28Q96RU2 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.34■□□□□ 0.53
USP28Q96RU2 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
USP28Q96RU2 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.34■□□□□ 0.53
USP28Q96RU2 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
USP28Q96RU2 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP28Q96RU2 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USP28Q96RU2 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP28Q96RU2 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
USP28Q96RU2 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
USP28Q96RU2 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.33■□□□□ 0.53
USP28Q96RU2 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP28Q96RU2 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP28Q96RU2 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.33■□□□□ 0.53
USP28Q96RU2 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
USP28Q96RU2 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
USP28Q96RU2 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP28Q96RU2 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
USP28Q96RU2 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms