Protein–RNA interactions for Protein: Q12829

RAB40B, Ras-related protein Rab-40B, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40BQ12829 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.42□□□□□ -0.1
RAB40BQ12829 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.42□□□□□ -0.1
RAB40BQ12829 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.42□□□□□ -0.1
RAB40BQ12829 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
RAB40BQ12829 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.42□□□□□ -0.1
RAB40BQ12829 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.42□□□□□ -0.1
RAB40BQ12829 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.42□□□□□ -0.1
RAB40BQ12829 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.42□□□□□ -0.1
RAB40BQ12829 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.42□□□□□ -0.1
RAB40BQ12829 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.42□□□□□ -0.1
RAB40BQ12829 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 AC091951.1-201ENST00000512854 2465 ntBASIC14.42□□□□□ -0.1
RAB40BQ12829 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 AC023908.3-201ENST00000564211 3047 ntBASIC14.42□□□□□ -0.1
RAB40BQ12829 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RAB40BQ12829 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
RAB40BQ12829 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.42□□□□□ -0.1
RAB40BQ12829 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAB40BQ12829 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.42□□□□□ -0.1
RAB40BQ12829 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.41□□□□□ -0.1
RAB40BQ12829 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 HMGA1P7-201ENST00000406908 502 ntBASIC14.41□□□□□ -0.1
RAB40BQ12829 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.41□□□□□ -0.1
RAB40BQ12829 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 HS6ST1P1-201ENST00000481504 1234 ntBASIC14.41□□□□□ -0.1
RAB40BQ12829 AC021087.4-201ENST00000563761 564 ntBASIC14.41□□□□□ -0.1
RAB40BQ12829 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.41□□□□□ -0.1
RAB40BQ12829 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
RAB40BQ12829 MIR4321-201ENST00000592276 80 ntBASIC14.41□□□□□ -0.1
RAB40BQ12829 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
RAB40BQ12829 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.41□□□□□ -0.1
RAB40BQ12829 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.41□□□□□ -0.1
RAB40BQ12829 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.41□□□□□ -0.1
RAB40BQ12829 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.41□□□□□ -0.1
RAB40BQ12829 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.41□□□□□ -0.1
RAB40BQ12829 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAB40BQ12829 AC126365.1-201ENST00000578585 1514 ntBASIC14.41□□□□□ -0.1
RAB40BQ12829 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
RAB40BQ12829 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.4□□□□□ -0.1
RAB40BQ12829 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RAB40BQ12829 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
RAB40BQ12829 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RAB40BQ12829 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RAB40BQ12829 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.4□□□□□ -0.1
RAB40BQ12829 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.4□□□□□ -0.1
RAB40BQ12829 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RAB40BQ12829 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RAB40BQ12829 AGAP7P-201ENST00000582299 2062 ntBASIC14.4□□□□□ -0.1
RAB40BQ12829 AGAP14-201ENST00000624701 2060 ntBASIC14.4□□□□□ -0.1
RAB40BQ12829 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
RAB40BQ12829 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.4□□□□□ -0.1
RAB40BQ12829 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RAB40BQ12829 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RAB40BQ12829 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RAB40BQ12829 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RAB40BQ12829 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms