Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.69■□□□□ 0.26
EPHB3P54753 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.69■□□□□ 0.26
EPHB3P54753 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.69■□□□□ 0.26
EPHB3P54753 AC106886.1-201ENST00000568660 600 ntBASIC16.69■□□□□ 0.26
EPHB3P54753 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.69■□□□□ 0.26
EPHB3P54753 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
EPHB3P54753 AL450472.2-201ENST00000603663 1156 ntBASIC16.69■□□□□ 0.26
EPHB3P54753 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 AL158212.4-201ENST00000624062 1286 ntBASIC16.69■□□□□ 0.26
EPHB3P54753 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
EPHB3P54753 CDC14C-201ENST00000428251 1719 ntBASIC16.69■□□□□ 0.26
EPHB3P54753 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
EPHB3P54753 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
EPHB3P54753 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
EPHB3P54753 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.68■□□□□ 0.26
EPHB3P54753 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 REXO1L1P-202ENST00000608646 1974 ntBASIC16.68■□□□□ 0.26
EPHB3P54753 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 AC074338.1-201ENST00000416825 156 ntBASIC16.68■□□□□ 0.26
EPHB3P54753 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
EPHB3P54753 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.68■□□□□ 0.26
EPHB3P54753 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.68■□□□□ 0.26
EPHB3P54753 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.68■□□□□ 0.26
EPHB3P54753 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.68■□□□□ 0.26
EPHB3P54753 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.68■□□□□ 0.26
EPHB3P54753 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.68■□□□□ 0.26
EPHB3P54753 KRT17P8-201ENST00000540749 863 ntBASIC16.68■□□□□ 0.26
EPHB3P54753 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 RAB43P1-201ENST00000561790 589 ntBASIC16.68■□□□□ 0.26
EPHB3P54753 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.68■□□□□ 0.26
EPHB3P54753 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.68■□□□□ 0.26
EPHB3P54753 AC017083.2-201ENST00000608069 979 ntBASIC16.68■□□□□ 0.26
EPHB3P54753 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
EPHB3P54753 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 AC006449.6-201ENST00000612330 2296 ntBASIC16.68■□□□□ 0.26
EPHB3P54753 AD000864.1-201ENST00000624076 2295 ntBASIC16.68■□□□□ 0.26
EPHB3P54753 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
EPHB3P54753 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
EPHB3P54753 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
EPHB3P54753 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.67■□□□□ 0.26
EPHB3P54753 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
EPHB3P54753 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
EPHB3P54753 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.67■□□□□ 0.26
EPHB3P54753 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.67■□□□□ 0.26
EPHB3P54753 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.67■□□□□ 0.26
EPHB3P54753 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.67■□□□□ 0.26
EPHB3P54753 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.67■□□□□ 0.26
EPHB3P54753 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.67■□□□□ 0.26
EPHB3P54753 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.67■□□□□ 0.26
EPHB3P54753 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.67■□□□□ 0.26
EPHB3P54753 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
EPHB3P54753 AL391069.4-201ENST00000609583 481 ntBASIC16.67■□□□□ 0.26
EPHB3P54753 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.67■□□□□ 0.26
EPHB3P54753 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
EPHB3P54753 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms