Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.18■□□□□ 0.02
SOX3P41225 AC142381.1-201ENST00000426099 345 ntBASIC15.18■□□□□ 0.02
SOX3P41225 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.18■□□□□ 0.02
SOX3P41225 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX3P41225 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.18■□□□□ 0.02
SOX3P41225 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SOX3P41225 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 AC073389.1-201ENST00000595595 795 ntBASIC15.18■□□□□ 0.02
SOX3P41225 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 AC020765.3-201ENST00000613051 740 ntBASIC15.18■□□□□ 0.02
SOX3P41225 Z92544.3-201ENST00000624747 417 ntBASIC15.18■□□□□ 0.02
SOX3P41225 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SOX3P41225 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX3P41225 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.17■□□□□ 0.02
SOX3P41225 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SOX3P41225 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SOX3P41225 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SOX3P41225 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SOX3P41225 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.17■□□□□ 0.02
SOX3P41225 CYMP-203ENST00000474680 1263 ntBASIC15.17■□□□□ 0.02
SOX3P41225 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.17■□□□□ 0.02
SOX3P41225 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.17■□□□□ 0.02
SOX3P41225 ALG1L8P-201ENST00000533887 760 ntBASIC15.17■□□□□ 0.02
SOX3P41225 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.17■□□□□ 0.02
SOX3P41225 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.17■□□□□ 0.02
SOX3P41225 AC026150.2-201ENST00000564693 1156 ntBASIC15.17■□□□□ 0.02
SOX3P41225 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 AP001059.3-201ENST00000619053 235 ntBASIC15.17■□□□□ 0.02
SOX3P41225 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.17■□□□□ 0.02
SOX3P41225 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.17■□□□□ 0.02
SOX3P41225 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.17■□□□□ 0.02
SOX3P41225 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.17■□□□□ 0.02
SOX3P41225 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SOX3P41225 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SOX3P41225 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.17■□□□□ 0.02
SOX3P41225 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX3P41225 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX3P41225 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
SOX3P41225 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX3P41225 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.16■□□□□ 0.02
SOX3P41225 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 SPDYE14P-201ENST00000442619 822 ntBASIC15.16■□□□□ 0.02
SOX3P41225 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.16■□□□□ 0.02
SOX3P41225 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.16■□□□□ 0.02
SOX3P41225 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.16■□□□□ 0.02
SOX3P41225 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.16■□□□□ 0.02
SOX3P41225 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 AL355385.1-201ENST00000606123 409 ntBASIC15.16■□□□□ 0.02
SOX3P41225 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX3P41225 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.16■□□□□ 0.02
SOX3P41225 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SOX3P41225 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX3P41225 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms