Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TEX30-203ENST00000376022 828 ntTSL 2 BASIC21.02■□□□□ 0.96
HOXC9P31274 MIR648-201ENST00000385046 94 ntBASIC21.02■□□□□ 0.96
HOXC9P31274 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
HOXC9P31274 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC21.02■□□□□ 0.96
HOXC9P31274 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC21.02■□□□□ 0.96
HOXC9P31274 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC21.02■□□□□ 0.96
HOXC9P31274 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
HOXC9P31274 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC21.02■□□□□ 0.96
HOXC9P31274 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC21.02■□□□□ 0.96
HOXC9P31274 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC21.02■□□□□ 0.96
HOXC9P31274 AC015910.1-201ENST00000579400 975 ntBASIC21.02■□□□□ 0.96
HOXC9P31274 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC21.02■□□□□ 0.96
HOXC9P31274 MIR6869-201ENST00000619434 62 ntBASIC21.02■□□□□ 0.96
HOXC9P31274 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
HOXC9P31274 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC21.02■□□□□ 0.96
HOXC9P31274 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
HOXC9P31274 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC21.02■□□□□ 0.96
HOXC9P31274 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC21.02■□□□□ 0.96
HOXC9P31274 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
HOXC9P31274 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.95
HOXC9P31274 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
HOXC9P31274 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXC9P31274 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC21.01■□□□□ 0.95
HOXC9P31274 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXC9P31274 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXC9P31274 AC022137.2-201ENST00000503482 481 ntBASIC21.01■□□□□ 0.95
HOXC9P31274 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC21.01■□□□□ 0.95
HOXC9P31274 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HOXC9P31274 AC107373.2-201ENST00000607735 490 ntBASIC21.01■□□□□ 0.95
HOXC9P31274 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC21.01■□□□□ 0.95
HOXC9P31274 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC21.01■□□□□ 0.95
HOXC9P31274 HADH-212ENST00000638621 741 ntTSL 5 BASIC21.01■□□□□ 0.95
HOXC9P31274 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HOXC9P31274 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXC9P31274 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXC9P31274 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HOXC9P31274 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC9P31274 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXC9P31274 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
HOXC9P31274 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC21■□□□□ 0.95
HOXC9P31274 BRF1-202ENST00000379932 884 ntTSL 5 BASIC21■□□□□ 0.95
HOXC9P31274 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC21■□□□□ 0.95
HOXC9P31274 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC21■□□□□ 0.95
HOXC9P31274 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC21■□□□□ 0.95
HOXC9P31274 EHF-205ENST00000527935 557 ntTSL 2 BASIC21■□□□□ 0.95
HOXC9P31274 KRT90P-201ENST00000549264 1064 ntBASIC21■□□□□ 0.95
HOXC9P31274 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC21■□□□□ 0.95
HOXC9P31274 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC21■□□□□ 0.95
HOXC9P31274 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
HOXC9P31274 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC21■□□□□ 0.95
HOXC9P31274 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC21■□□□□ 0.95
HOXC9P31274 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC21■□□□□ 0.95
HOXC9P31274 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 AMT-233ENST00000636522 1620 ntTSL 2 BASIC21■□□□□ 0.95
HOXC9P31274 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC9P31274 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC21■□□□□ 0.95
HOXC9P31274 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HOXC9P31274 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC20.99■□□□□ 0.95
HOXC9P31274 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HOXC9P31274 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC9P31274 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms