Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 Z93015.1-201ENST00000451718 390 ntBASIC15.13■□□□□ 0.01
COL5A1P20908 KRT18P25-201ENST00000508931 1278 ntBASIC15.13■□□□□ 0.01
COL5A1P20908 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
COL5A1P20908 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.13■□□□□ 0.01
COL5A1P20908 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.13■□□□□ 0.01
COL5A1P20908 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.13■□□□□ 0.01
COL5A1P20908 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.13■□□□□ 0.01
COL5A1P20908 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.13■□□□□ 0.01
COL5A1P20908 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL5A1P20908 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
COL5A1P20908 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.12■□□□□ 0.01
COL5A1P20908 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.12■□□□□ 0.01
COL5A1P20908 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL5A1P20908 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 RNU1-114P-201ENST00000365297 166 ntBASIC15.12■□□□□ 0.01
COL5A1P20908 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
COL5A1P20908 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.12■□□□□ 0.01
COL5A1P20908 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 AC078819.1-201ENST00000547454 765 ntBASIC15.12■□□□□ 0.01
COL5A1P20908 AC012085.1-201ENST00000548270 765 ntBASIC15.12■□□□□ 0.01
COL5A1P20908 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.12■□□□□ 0.01
COL5A1P20908 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL5A1P20908 AC106872.11-201ENST00000605838 421 ntBASIC15.12■□□□□ 0.01
COL5A1P20908 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.12■□□□□ 0.01
COL5A1P20908 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.12■□□□□ 0.01
COL5A1P20908 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
COL5A1P20908 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL5A1P20908 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.12■□□□□ 0.01
COL5A1P20908 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL5A1P20908 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL5A1P20908 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.11■□□□□ 0.01
COL5A1P20908 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.11■□□□□ 0.01
COL5A1P20908 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.11■□□□□ 0.01
COL5A1P20908 CYP2T1P-202ENST00000641596 2535 ntBASIC15.11■□□□□ 0.01
COL5A1P20908 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
COL5A1P20908 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
COL5A1P20908 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.11■□□□□ 0.01
COL5A1P20908 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
COL5A1P20908 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.11■□□□□ 0.01
COL5A1P20908 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.11■□□□□ 0.01
COL5A1P20908 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.11■□□□□ 0.01
COL5A1P20908 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.11■□□□□ 0.01
COL5A1P20908 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL5A1P20908 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.11■□□□□ 0.01
COL5A1P20908 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.11■□□□□ 0.01
COL5A1P20908 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.11■□□□□ 0.01
COL5A1P20908 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
COL5A1P20908 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.11■□□□□ 0.01
COL5A1P20908 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.11■□□□□ 0.01
COL5A1P20908 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
COL5A1P20908 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.11■□□□□ 0.01
COL5A1P20908 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL5A1P20908 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
COL5A1P20908 PCDHA14-201ENST00000506751 2298 ntBASIC15.11■□□□□ 0.01
COL5A1P20908 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
COL5A1P20908 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC15.1■□□□□ 0.01
COL5A1P20908 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 SCARNA20.5-201ENST00000516991 142 ntBASIC15.1■□□□□ 0.01
COL5A1P20908 AP001582.1-201ENST00000525856 295 ntBASIC15.1■□□□□ 0.01
COL5A1P20908 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 AL022328.3-201ENST00000607943 679 ntBASIC15.1■□□□□ 0.01
COL5A1P20908 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 AL138709.1-201ENST00000614840 1693 ntBASIC15.1■□□□□ 0.01
COL5A1P20908 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms