Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.78■□□□□ 0.44
TPM1P09493 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.78■□□□□ 0.44
TPM1P09493 MIR3652-201ENST00000579335 131 ntBASIC17.78■□□□□ 0.44
TPM1P09493 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.78■□□□□ 0.44
TPM1P09493 LINC01711-201ENST00000598340 967 ntBASIC17.78■□□□□ 0.44
TPM1P09493 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
TPM1P09493 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.78■□□□□ 0.44
TPM1P09493 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.78■□□□□ 0.44
TPM1P09493 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TPM1P09493 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 AC008677.1-201ENST00000519230 1561 ntBASIC17.78■□□□□ 0.44
TPM1P09493 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TPM1P09493 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.77■□□□□ 0.44
TPM1P09493 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
TPM1P09493 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.77■□□□□ 0.44
TPM1P09493 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.77■□□□□ 0.44
TPM1P09493 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
TPM1P09493 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
TPM1P09493 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.77■□□□□ 0.44
TPM1P09493 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.77■□□□□ 0.44
TPM1P09493 AC008667.4-201ENST00000607370 168 ntBASIC17.77■□□□□ 0.44
TPM1P09493 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TPM1P09493 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TPM1P09493 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TPM1P09493 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
TPM1P09493 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
TPM1P09493 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TPM1P09493 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TPM1P09493 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TPM1P09493 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TPM1P09493 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 AC138035.3-201ENST00000622706 2791 ntBASIC17.76■□□□□ 0.43
TPM1P09493 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TPM1P09493 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.76■□□□□ 0.43
TPM1P09493 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
TPM1P09493 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TPM1P09493 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.76■□□□□ 0.43
TPM1P09493 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.76■□□□□ 0.43
TPM1P09493 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.76■□□□□ 0.43
TPM1P09493 AC021087.4-201ENST00000563761 564 ntBASIC17.76■□□□□ 0.43
TPM1P09493 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.76■□□□□ 0.43
TPM1P09493 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TPM1P09493 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.76■□□□□ 0.43
TPM1P09493 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.76■□□□□ 0.43
TPM1P09493 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TPM1P09493 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TPM1P09493 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.75■□□□□ 0.43
TPM1P09493 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TPM1P09493 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.75■□□□□ 0.43
TPM1P09493 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
TPM1P09493 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.75■□□□□ 0.43
TPM1P09493 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC17.75■□□□□ 0.43
TPM1P09493 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TPM1P09493 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TPM1P09493 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.75■□□□□ 0.43
TPM1P09493 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms