Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.94■□□□□ 0.3
RTN3O95197 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
RTN3O95197 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.94■□□□□ 0.3
RTN3O95197 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.94■□□□□ 0.3
RTN3O95197 MRPS18AP1-201ENST00000414458 589 ntBASIC16.94■□□□□ 0.3
RTN3O95197 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
RTN3O95197 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.94■□□□□ 0.3
RTN3O95197 ZNF890P-202ENST00000530367 1156 ntBASIC16.94■□□□□ 0.3
RTN3O95197 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.94■□□□□ 0.3
RTN3O95197 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 AL844908.2-201ENST00000609461 460 ntBASIC16.94■□□□□ 0.3
RTN3O95197 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.94■□□□□ 0.3
RTN3O95197 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
RTN3O95197 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.94■□□□□ 0.3
RTN3O95197 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.94■□□□□ 0.3
RTN3O95197 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
RTN3O95197 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTN3O95197 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
RTN3O95197 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 AC132872.4-202ENST00000622924 2756 ntBASIC16.93■□□□□ 0.3
RTN3O95197 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.93■□□□□ 0.3
RTN3O95197 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.93■□□□□ 0.3
RTN3O95197 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.93■□□□□ 0.3
RTN3O95197 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.93■□□□□ 0.3
RTN3O95197 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.93■□□□□ 0.3
RTN3O95197 AC002472.2-201ENST00000442739 958 ntBASIC16.93■□□□□ 0.3
RTN3O95197 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.93■□□□□ 0.3
RTN3O95197 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.93■□□□□ 0.3
RTN3O95197 AC243562.2-201ENST00000561247 970 ntBASIC16.93■□□□□ 0.3
RTN3O95197 RN7SL204P-201ENST00000582831 262 ntBASIC16.93■□□□□ 0.3
RTN3O95197 AC009118.2-201ENST00000613275 655 ntBASIC16.93■□□□□ 0.3
RTN3O95197 MIR6069-201ENST00000620069 79 ntBASIC16.93■□□□□ 0.3
RTN3O95197 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.93■□□□□ 0.3
RTN3O95197 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.93■□□□□ 0.3
RTN3O95197 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
RTN3O95197 CYP4F24P-201ENST00000586049 1580 ntBASIC16.93■□□□□ 0.3
RTN3O95197 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
RTN3O95197 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTN3O95197 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.93■□□□□ 0.3
RTN3O95197 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
RTN3O95197 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTN3O95197 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
RTN3O95197 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTN3O95197 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTN3O95197 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.92■□□□□ 0.3
RTN3O95197 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
RTN3O95197 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTN3O95197 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RTN3O95197 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTN3O95197 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTN3O95197 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms