Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM38O00635 MRPS18AP1-201ENST00000414458 589 ntBASIC16.22■□□□□ 0.19
TRIM38O00635 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.22■□□□□ 0.19
TRIM38O00635 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM38O00635 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.22■□□□□ 0.19
TRIM38O00635 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.22■□□□□ 0.19
TRIM38O00635 SERBP1P5-201ENST00000510079 1181 ntBASIC16.22■□□□□ 0.19
TRIM38O00635 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM38O00635 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.22■□□□□ 0.19
TRIM38O00635 RARRES2P9-201ENST00000565168 469 ntBASIC16.22■□□□□ 0.19
TRIM38O00635 AC021097.1-201ENST00000607902 574 ntBASIC16.22■□□□□ 0.19
TRIM38O00635 AC073592.8-201ENST00000624126 511 ntBASIC16.22■□□□□ 0.19
TRIM38O00635 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
TRIM38O00635 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM38O00635 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TRIM38O00635 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.22■□□□□ 0.19
TRIM38O00635 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
TRIM38O00635 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM38O00635 AP3S2-216ENST00000617003 1561 ntBASIC16.21■□□□□ 0.19
TRIM38O00635 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
TRIM38O00635 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRIM38O00635 AC100757.3-201ENST00000622361 1406 ntBASIC16.21■□□□□ 0.19
TRIM38O00635 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM38O00635 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM38O00635 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM38O00635 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM38O00635 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM38O00635 HLA-J-202ENST00000469281 1241 ntBASIC16.21■□□□□ 0.19
TRIM38O00635 AC105233.2-201ENST00000523697 349 ntBASIC16.21■□□□□ 0.19
TRIM38O00635 AP005018.1-201ENST00000525475 301 ntBASIC16.21■□□□□ 0.19
TRIM38O00635 AF228730.5-201ENST00000530288 346 ntBASIC16.21■□□□□ 0.19
TRIM38O00635 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM38O00635 AC003101.2-201ENST00000612557 442 ntBASIC16.21■□□□□ 0.19
TRIM38O00635 AL590560.3-201ENST00000623350 461 ntBASIC16.21■□□□□ 0.19
TRIM38O00635 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TRIM38O00635 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM38O00635 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM38O00635 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM38O00635 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM38O00635 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM38O00635 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
TRIM38O00635 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.21■□□□□ 0.18
TRIM38O00635 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.21■□□□□ 0.18
TRIM38O00635 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM38O00635 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM38O00635 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM38O00635 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM38O00635 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM38O00635 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM38O00635 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM38O00635 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TRIM38O00635 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM38O00635 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM38O00635 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM38O00635 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM38O00635 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM38O00635 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TRIM38O00635 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM38O00635 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM38O00635 AC092850.2-201ENST00000623821 2697 ntBASIC16.2■□□□□ 0.18
TRIM38O00635 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM38O00635 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM38O00635 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.2■□□□□ 0.18
TRIM38O00635 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRIM38O00635 TSSK5P-201ENST00000423978 907 ntBASIC16.2■□□□□ 0.18
TRIM38O00635 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.2■□□□□ 0.18
TRIM38O00635 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM38O00635 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TRIM38O00635 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM38O00635 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.2■□□□□ 0.18
TRIM38O00635 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM38O00635 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms