Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AC008677.1-201ENST00000519230 1561 ntBASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 AC068418.2-201ENST00000577309 3703 ntBASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RHBDD3Q9Y3P4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.15
RHBDD3Q9Y3P4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
RHBDD3Q9Y3P4 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 AC140658.5-201ENST00000438532 169 ntBASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 AC109635.5-201ENST00000533593 962 ntBASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 AP002414.2-201ENST00000591780 3365 ntBASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.14□□□□□ -0.15
RHBDD3Q9Y3P4 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 AC092474.2-201ENST00000424288 719 ntBASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms