Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL133215.2-201ENST00000609242 977 ntBASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AC138649.4-201ENST00000612222 287 ntBASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AL136379.1-201ENST00000623471 2642 ntBASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM39Q9HCM9 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 AC092364.2-201ENST00000596710 2692 ntBASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 MIR770-201ENST00000390219 98 ntBASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 TREML5P-201ENST00000421694 576 ntBASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 PCDHA1-201ENST00000378133 2726 ntBASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 FO538757.1-201ENST00000623083 1397 ntBASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 DOC2GP-204ENST00000639052 2548 ntBASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM39Q9HCM9 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms