Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB4Q8WW32 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AC084018.2-201ENST00000613093 2607 ntBASIC16.06■□□□□ 0.16
HMGB4Q8WW32 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AC078925.2-201ENST00000624013 1973 ntBASIC16.06■□□□□ 0.16
HMGB4Q8WW32 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 POU5F1P6-201ENST00000466990 990 ntBASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AC104989.1-201ENST00000519711 778 ntBASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 BTNL10-201ENST00000595971 695 ntBASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AL158212.4-201ENST00000624062 1286 ntBASIC16.06■□□□□ 0.16
HMGB4Q8WW32 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.06■□□□□ 0.16
HMGB4Q8WW32 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB4Q8WW32 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 KRT8P37-201ENST00000451609 1420 ntBASIC16.05■□□□□ 0.16
HMGB4Q8WW32 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 AC018665.1-201ENST00000622927 1362 ntBASIC16.05■□□□□ 0.16
HMGB4Q8WW32 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 BOLA2P3-201ENST00000404566 256 ntBASIC16.05■□□□□ 0.16
HMGB4Q8WW32 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 AC133539.2-201ENST00000604757 467 ntBASIC16.05■□□□□ 0.16
HMGB4Q8WW32 CU634019.7-201ENST00000624153 1185 ntBASIC16.05■□□□□ 0.16
HMGB4Q8WW32 FP236241.2-201ENST00000624906 1185 ntBASIC16.05■□□□□ 0.16
HMGB4Q8WW32 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB4Q8WW32 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms