Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 MEP1AP4-201ENST00000423244 1087 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC022210.1-201ENST00000449856 793 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AL589987.1-201ENST00000453380 819 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 TIMM17BP1-201ENST00000545713 516 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC023310.3-201ENST00000557027 670 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC100756.1-201ENST00000562736 682 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 WASH4P-201ENST00000564273 1246 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC138749.3-201ENST00000567691 622 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC025048.3-201ENST00000590609 569 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC074044.1-201ENST00000609673 707 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC116165.1-201ENST00000611806 668 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC005702.4-201ENST00000618393 416 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 SLC7A15P-201ENST00000424028 1363 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 PCDHA12-202ENST00000613593 2588 ntBASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.1■□□□□ 0.17
HDDC3Q8N4P3 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 AC245100.5-201ENST00000452108 331 ntBASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 ME2P1-201ENST00000426028 1970 ntBASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HDDC3Q8N4P3 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HDDC3Q8N4P3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HDDC3Q8N4P3 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.08■□□□□ 0.17
HDDC3Q8N4P3 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.08■□□□□ 0.17
HDDC3Q8N4P3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HDDC3Q8N4P3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.08■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms