Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.52■□□□□ 0.07
PPP4R4Q6NUP7 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PPP4R4Q6NUP7 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.52■□□□□ 0.07
PPP4R4Q6NUP7 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.52■□□□□ 0.07
PPP4R4Q6NUP7 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PPP4R4Q6NUP7 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.52■□□□□ 0.07
PPP4R4Q6NUP7 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.52■□□□□ 0.07
PPP4R4Q6NUP7 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
PPP4R4Q6NUP7 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.52■□□□□ 0.07
PPP4R4Q6NUP7 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 ELK2BP-201ENST00000415014 1224 ntBASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 POU5F1P6-201ENST00000466990 990 ntBASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 AL356488.2-201ENST00000602755 427 ntBASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PPP4R4Q6NUP7 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 AL031731.1-201ENST00000642131 2094 ntBASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 AL109954.1-202ENST00000564051 2148 ntBASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 AC104109.2-201ENST00000602919 1418 ntBASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PPP4R4Q6NUP7 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PPP4R4Q6NUP7 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.49■□□□□ 0.07
PPP4R4Q6NUP7 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.49■□□□□ 0.07
PPP4R4Q6NUP7 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PPP4R4Q6NUP7 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PPP4R4Q6NUP7 AC006504.4-201ENST00000592118 1568 ntBASIC15.49■□□□□ 0.07
PPP4R4Q6NUP7 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.49■□□□□ 0.07
PPP4R4Q6NUP7 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.49■□□□□ 0.07
PPP4R4Q6NUP7 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PPP4R4Q6NUP7 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms