Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
HSPG2P98160 AL592424.1-201ENST00000563624 1536 ntBASIC9.69□□□□□ -0.86
HSPG2P98160 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
HSPG2P98160 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 SLC16A6P1-201ENST00000413214 1059 ntBASIC9.69□□□□□ -0.86
HSPG2P98160 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 AC006335.1-201ENST00000445200 547 ntBASIC9.69□□□□□ -0.86
HSPG2P98160 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC9.69□□□□□ -0.86
HSPG2P98160 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC9.69□□□□□ -0.86
HSPG2P98160 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC9.68□□□□□ -0.86
HSPG2P98160 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC9.68□□□□□ -0.86
HSPG2P98160 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC9.68□□□□□ -0.86
HSPG2P98160 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC9.68□□□□□ -0.86
HSPG2P98160 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 RNU1-114P-201ENST00000365297 166 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC9.68□□□□□ -0.86
HSPG2P98160 RCC2P8-201ENST00000502779 1035 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 AC005740.2-201ENST00000511085 419 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC9.68□□□□□ -0.86
HSPG2P98160 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC9.68□□□□□ -0.86
HSPG2P98160 AC012044.1-201ENST00000603431 297 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 CHMP1AP1-201ENST00000445563 662 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 AP002803.1-201ENST00000528836 498 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 AC012158.2-201ENST00000536546 354 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 AC138466.4-201ENST00000623965 852 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 CD276-203ENST00000537340 2439 ntTSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC9.68□□□□□ -0.86
HSPG2P98160 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 KRT18P25-201ENST00000508931 1278 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC9.68□□□□□ -0.86
HSPG2P98160 MIR6858-201ENST00000620733 67 ntBASIC9.68□□□□□ -0.86
HSPG2P98160 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
HSPG2P98160 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms