Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.07■□□□□ 0.64
BRCA1P38398 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.07■□□□□ 0.64
BRCA1P38398 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
BRCA1P38398 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.07■□□□□ 0.64
BRCA1P38398 RPSAP31-201ENST00000416648 895 ntBASIC19.07■□□□□ 0.64
BRCA1P38398 AL596276.2-201ENST00000447525 331 ntBASIC19.07■□□□□ 0.64
BRCA1P38398 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC19.07■□□□□ 0.64
BRCA1P38398 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC19.07■□□□□ 0.64
BRCA1P38398 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC19.07■□□□□ 0.64
BRCA1P38398 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.07■□□□□ 0.64
BRCA1P38398 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC19.07■□□□□ 0.64
BRCA1P38398 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC19.07■□□□□ 0.64
BRCA1P38398 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.07■□□□□ 0.64
BRCA1P38398 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BRCA1P38398 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 AL138799.1-201ENST00000448213 1675 ntBASIC19.06■□□□□ 0.64
BRCA1P38398 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
BRCA1P38398 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
BRCA1P38398 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.06■□□□□ 0.64
BRCA1P38398 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.06■□□□□ 0.64
BRCA1P38398 AC078925.2-201ENST00000624013 1973 ntBASIC19.06■□□□□ 0.64
BRCA1P38398 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.06■□□□□ 0.64
BRCA1P38398 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
BRCA1P38398 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC19.06■□□□□ 0.64
BRCA1P38398 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC19.06■□□□□ 0.64
BRCA1P38398 FGFR3P1-201ENST00000449999 601 ntBASIC19.06■□□□□ 0.64
BRCA1P38398 AC106794.1-201ENST00000506935 792 ntBASIC19.06■□□□□ 0.64
BRCA1P38398 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC19.06■□□□□ 0.64
BRCA1P38398 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC19.06■□□□□ 0.64
BRCA1P38398 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.06■□□□□ 0.64
BRCA1P38398 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.06■□□□□ 0.64
BRCA1P38398 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.06■□□□□ 0.64
BRCA1P38398 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.06■□□□□ 0.64
BRCA1P38398 KRT8P14-201ENST00000414254 1442 ntBASIC19.06■□□□□ 0.64
BRCA1P38398 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BRCA1P38398 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.05■□□□□ 0.64
BRCA1P38398 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
BRCA1P38398 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
BRCA1P38398 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC19.05■□□□□ 0.64
BRCA1P38398 AC098935.1-201ENST00000446057 611 ntBASIC19.05■□□□□ 0.64
BRCA1P38398 NOC2LP1-201ENST00000450578 752 ntBASIC19.05■□□□□ 0.64
BRCA1P38398 AL353637.1-201ENST00000451571 732 ntBASIC19.05■□□□□ 0.64
BRCA1P38398 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.05■□□□□ 0.64
BRCA1P38398 SYT17-208ENST00000568433 812 ntTSL 3 BASIC19.05■□□□□ 0.64
BRCA1P38398 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC19.05■□□□□ 0.64
BRCA1P38398 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
BRCA1P38398 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC19.05■□□□□ 0.64
BRCA1P38398 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.05■□□□□ 0.64
BRCA1P38398 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
BRCA1P38398 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.05■□□□□ 0.64
BRCA1P38398 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 DPM3-202ENST00000368399 517 ntBASIC19.05■□□□□ 0.64
BRCA1P38398 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRCA1P38398 AC234644.1-201ENST00000406065 370 ntBASIC19.05■□□□□ 0.64
BRCA1P38398 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC19.05■□□□□ 0.64
BRCA1P38398 AL160314.3-201ENST00000556041 767 ntBASIC19.05■□□□□ 0.64
BRCA1P38398 MIR3147-201ENST00000577811 66 ntBASIC19.05■□□□□ 0.64
BRCA1P38398 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC19.05■□□□□ 0.64
BRCA1P38398 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC19.05■□□□□ 0.64
BRCA1P38398 LRRFIP1P1-201ENST00000498774 2246 ntBASIC19.05■□□□□ 0.64
BRCA1P38398 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC19.05■□□□□ 0.64
BRCA1P38398 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
BRCA1P38398 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.05■□□□□ 0.64
BRCA1P38398 AC022188.1-201ENST00000620960 1664 ntBASIC19.04■□□□□ 0.64
BRCA1P38398 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
BRCA1P38398 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms