Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
CKS2P33552 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
CKS2P33552 LOX-206ENST00000639739 1626 ntTSL 5 BASIC11.9□□□□□ -0.5
CKS2P33552 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS2P33552 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
CKS2P33552 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
CKS2P33552 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS2P33552 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS2P33552 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS2P33552 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS2P33552 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC11.9□□□□□ -0.5
CKS2P33552 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC11.9□□□□□ -0.5
CKS2P33552 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC11.9□□□□□ -0.5
CKS2P33552 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS2P33552 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC11.9□□□□□ -0.5
CKS2P33552 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC11.9□□□□□ -0.5
CKS2P33552 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
CKS2P33552 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC11.9□□□□□ -0.5
CKS2P33552 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
CKS2P33552 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CKS2P33552 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51
CKS2P33552 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
CKS2P33552 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
CKS2P33552 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.51
CKS2P33552 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.51
CKS2P33552 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
CKS2P33552 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC11.9□□□□□ -0.51
CKS2P33552 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC11.9□□□□□ -0.51
CKS2P33552 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
CKS2P33552 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
CKS2P33552 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC11.9□□□□□ -0.51
CKS2P33552 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC11.89□□□□□ -0.51
CKS2P33552 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC11.89□□□□□ -0.51
CKS2P33552 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 GRK6P1-201ENST00000400595 1711 ntBASIC11.89□□□□□ -0.51
CKS2P33552 AC131009.4-201ENST00000624048 1740 ntBASIC11.89□□□□□ -0.51
CKS2P33552 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
CKS2P33552 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
CKS2P33552 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC11.89□□□□□ -0.51
CKS2P33552 TSPY22P-201ENST00000427496 604 ntBASIC11.89□□□□□ -0.51
CKS2P33552 AC246785.2-201ENST00000432512 513 ntBASIC11.89□□□□□ -0.51
CKS2P33552 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 AC112907.2-201ENST00000448639 330 ntBASIC11.89□□□□□ -0.51
CKS2P33552 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC11.89□□□□□ -0.51
CKS2P33552 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC11.89□□□□□ -0.51
CKS2P33552 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CKS2P33552 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms