Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.63■□□□□ 0.57
ERCC3P19447 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC3P19447 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC3P19447 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
ERCC3P19447 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC3P19447 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.62■□□□□ 0.57
ERCC3P19447 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.62■□□□□ 0.57
ERCC3P19447 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
ERCC3P19447 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.62■□□□□ 0.57
ERCC3P19447 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.62■□□□□ 0.57
ERCC3P19447 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.62■□□□□ 0.57
ERCC3P19447 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.62■□□□□ 0.57
ERCC3P19447 AC055876.2-201ENST00000531834 546 ntBASIC18.62■□□□□ 0.57
ERCC3P19447 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.62■□□□□ 0.57
ERCC3P19447 AL109936.8-201ENST00000641772 604 ntBASIC18.62■□□□□ 0.57
ERCC3P19447 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
ERCC3P19447 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.62■□□□□ 0.57
ERCC3P19447 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC3P19447 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC18.62■□□□□ 0.57
ERCC3P19447 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.61■□□□□ 0.57
ERCC3P19447 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.61■□□□□ 0.57
ERCC3P19447 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
ERCC3P19447 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
ERCC3P19447 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
ERCC3P19447 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ERCC3P19447 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
ERCC3P19447 AL589987.1-201ENST00000453380 819 ntBASIC18.61■□□□□ 0.57
ERCC3P19447 AL139010.1-201ENST00000454878 894 ntBASIC18.61■□□□□ 0.57
ERCC3P19447 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.61■□□□□ 0.57
ERCC3P19447 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.61■□□□□ 0.57
ERCC3P19447 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.61■□□□□ 0.57
ERCC3P19447 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.61■□□□□ 0.57
ERCC3P19447 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.61■□□□□ 0.57
ERCC3P19447 MIR6069-201ENST00000620069 79 ntBASIC18.61■□□□□ 0.57
ERCC3P19447 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
ERCC3P19447 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 LINC02199-201ENST00000506655 2702 ntBASIC18.61■□□□□ 0.57
ERCC3P19447 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ERCC3P19447 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
ERCC3P19447 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
ERCC3P19447 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
ERCC3P19447 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
ERCC3P19447 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
ERCC3P19447 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.6■□□□□ 0.57
ERCC3P19447 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.6■□□□□ 0.57
ERCC3P19447 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
ERCC3P19447 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
ERCC3P19447 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.6■□□□□ 0.57
ERCC3P19447 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC3P19447 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.6■□□□□ 0.57
ERCC3P19447 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.6■□□□□ 0.57
ERCC3P19447 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.6■□□□□ 0.57
ERCC3P19447 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms