Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.52■□□□□ 0.08
SLC28A1O00337 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.52■□□□□ 0.08
SLC28A1O00337 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SLC28A1O00337 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SLC28A1O00337 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SLC28A1O00337 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
SLC28A1O00337 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
SLC28A1O00337 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SLC28A1O00337 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
SLC28A1O00337 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
SLC28A1O00337 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
SLC28A1O00337 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SLC28A1O00337 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SLC28A1O00337 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
SLC28A1O00337 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.52■□□□□ 0.08
SLC28A1O00337 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.52■□□□□ 0.08
SLC28A1O00337 RPL13AP23-201ENST00000480739 586 ntBASIC15.52■□□□□ 0.08
SLC28A1O00337 AC098859.1-201ENST00000502915 1238 ntBASIC15.52■□□□□ 0.08
SLC28A1O00337 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SLC28A1O00337 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.52■□□□□ 0.08
SLC28A1O00337 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.52■□□□□ 0.08
SLC28A1O00337 PDPK2P-202ENST00000562415 1191 ntBASIC15.52■□□□□ 0.08
SLC28A1O00337 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.52■□□□□ 0.08
SLC28A1O00337 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.52■□□□□ 0.08
SLC28A1O00337 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SLC28A1O00337 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SLC28A1O00337 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SLC28A1O00337 AC103702.1-201ENST00000548801 2630 ntBASIC15.52■□□□□ 0.07
SLC28A1O00337 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SLC28A1O00337 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SLC28A1O00337 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
SLC28A1O00337 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.52■□□□□ 0.07
SLC28A1O00337 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SLC28A1O00337 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SLC28A1O00337 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SLC28A1O00337 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SLC28A1O00337 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.52■□□□□ 0.07
SLC28A1O00337 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 SSR4P1-203ENST00000599569 2260 ntBASIC15.51■□□□□ 0.07
SLC28A1O00337 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 AC013268.4-201ENST00000637413 2228 ntBASIC15.51■□□□□ 0.07
SLC28A1O00337 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.51■□□□□ 0.07
SLC28A1O00337 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.51■□□□□ 0.07
SLC28A1O00337 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
SLC28A1O00337 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 AC073389.1-201ENST00000595595 795 ntBASIC15.51■□□□□ 0.07
SLC28A1O00337 PPT1-215ENST00000641471 2368 ntBASIC15.51■□□□□ 0.07
SLC28A1O00337 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 AC134407.2-201ENST00000625089 1978 ntBASIC15.51■□□□□ 0.07
SLC28A1O00337 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.51■□□□□ 0.07
SLC28A1O00337 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SLC28A1O00337 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.51■□□□□ 0.07
SLC28A1O00337 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SLC28A1O00337 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms