Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 BASP1P1-201ENST00000430708 665 ntBASIC15.68■□□□□ 0.1
VPS4AQ9UN37 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 AC093520.2-201ENST00000561830 333 ntBASIC15.68■□□□□ 0.1
VPS4AQ9UN37 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.67■□□□□ 0.1
VPS4AQ9UN37 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 AC112191.1-201ENST00000523689 701 ntBASIC15.67■□□□□ 0.1
VPS4AQ9UN37 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 AC012645.4-201ENST00000610691 1061 ntBASIC15.67■□□□□ 0.1
VPS4AQ9UN37 AC020765.3-201ENST00000613051 740 ntBASIC15.67■□□□□ 0.1
VPS4AQ9UN37 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.67■□□□□ 0.1
VPS4AQ9UN37 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VPS4AQ9UN37 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 DBET-201ENST00000630918 3363 ntBASIC15.66■□□□□ 0.1
VPS4AQ9UN37 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms