Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 KRT18P31-201ENST00000506277 1292 ntBASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 AC087641.1-201ENST00000557561 1021 ntBASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 AC091304.2-201ENST00000564639 760 ntBASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 AP005117.1-202ENST00000581724 1908 ntBASIC13.96□□□□□ -0.18
CHMP1AQ9HD42 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 AC087386.2-201ENST00000623212 4637 ntBASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 DFFB-203ENST00000341385 572 ntTSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 RAB17-203ENST00000409576 466 ntTSL 3 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 ELK2BP-201ENST00000415014 1224 ntBASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 UPK3BP1-201ENST00000428678 509 ntBASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 PMS2P1-201ENST00000431037 1228 ntBASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 FGFR3P6-201ENST00000457012 610 ntBASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 SLC25A6P2-201ENST00000497974 877 ntBASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 REXO1L3P-201ENST00000622202 1288 ntBASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 AL805961.1-202ENST00000641562 540 ntBASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 AC006504.4-201ENST00000592118 1568 ntBASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms