Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 HNRNPDP1-201ENST00000439535 754 ntBASIC14.13□□□□□ -0.15
NKX3-1Q99801 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 AC093909.1-201ENST00000504731 1122 ntBASIC14.13□□□□□ -0.15
NKX3-1Q99801 OR7E14P-202ENST00000530490 1290 ntBASIC14.13□□□□□ -0.15
NKX3-1Q99801 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 AP001005.1-201ENST00000571755 1248 ntBASIC14.13□□□□□ -0.15
NKX3-1Q99801 OR7E47P-204ENST00000575924 449 ntBASIC14.13□□□□□ -0.15
NKX3-1Q99801 AC005412.3-201ENST00000580309 715 ntBASIC14.13□□□□□ -0.15
NKX3-1Q99801 SLC25A6P4-201ENST00000586535 553 ntBASIC14.13□□□□□ -0.15
NKX3-1Q99801 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 AL773604.1-201ENST00000617417 272 ntBASIC14.13□□□□□ -0.15
NKX3-1Q99801 AP001350.2-201ENST00000625104 1094 ntBASIC14.13□□□□□ -0.15
NKX3-1Q99801 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.13□□□□□ -0.15
NKX3-1Q99801 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NKX3-1Q99801 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 MED22-202ENST00000371999 987 ntTSL 3 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 AC136632.2-201ENST00000512891 861 ntBASIC14.12□□□□□ -0.15
NKX3-1Q99801 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 AC120114.3-201ENST00000611923 658 ntBASIC14.12□□□□□ -0.15
NKX3-1Q99801 VPS51-217ENST00000639871 243 ntTSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 SSR4P1-203ENST00000599569 2260 ntBASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms