Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 HAUS4P1-201ENST00000406739 1145 ntBASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 AC112492.5-201ENST00000421897 457 ntBASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 DFFBP1-201ENST00000433250 979 ntBASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 AL139010.1-201ENST00000454878 894 ntBASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.94■□□□□ 0.62
NKX2-3Q8TAU0 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AL035456.1-201ENST00000456064 1369 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 KRT8P12-202ENST00000472924 1397 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AL513523.2-202ENST00000427283 2040 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AP003680.1-201ENST00000598970 3660 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 DGCR5-201ENST00000399539 862 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 EEF1DP4-201ENST00000446006 880 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AC245100.5-201ENST00000452108 331 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 SPDYE18-201ENST00000510091 1050 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AC008738.7-201ENST00000609744 511 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AC087499.5-201ENST00000452760 1342 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 AL365203.3-201ENST00000609742 2057 ntBASIC18.93■□□□□ 0.62
NKX2-3Q8TAU0 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 AL133338.1-201ENST00000565695 1517 ntBASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX2-3Q8TAU0 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms