Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 MIR4722-201ENST00000578292 60 ntBASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 AL607033.1-201ENST00000623900 1599 ntBASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC88AQ3V6T2 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 AC008687.7-202ENST00000637404 953 ntBASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 AL590640.2-201ENST00000457038 527 ntBASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 NDUFV2P1-201ENST00000596415 907 ntBASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 U62317.3-201ENST00000608319 855 ntBASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC88AQ3V6T2 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 AL591846.1-201ENST00000451736 433 ntBASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 AC078819.1-201ENST00000547454 765 ntBASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 AC012085.1-201ENST00000548270 765 ntBASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 NAT9-222ENST00000583476 583 ntTSL 3 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC88AQ3V6T2 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms