Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 RGS5-214ENST00000429865 754 ntTSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC9.7□□□□□ -0.86
HSPG2P98160 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC9.7□□□□□ -0.86
HSPG2P98160 AC097359.3-201ENST00000603982 1210 ntBASIC9.7□□□□□ -0.86
HSPG2P98160 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC9.7□□□□□ -0.86
HSPG2P98160 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC9.7□□□□□ -0.86
HSPG2P98160 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC9.7□□□□□ -0.86
HSPG2P98160 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC9.7□□□□□ -0.86
HSPG2P98160 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC9.7□□□□□ -0.86
HSPG2P98160 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC9.7□□□□□ -0.86
HSPG2P98160 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 MIR5196-201ENST00000578146 115 ntBASIC9.7□□□□□ -0.86
HSPG2P98160 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC9.7□□□□□ -0.86
HSPG2P98160 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC9.7□□□□□ -0.86
HSPG2P98160 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 NOC2LP1-201ENST00000450578 752 ntBASIC9.7□□□□□ -0.86
HSPG2P98160 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC9.7□□□□□ -0.86
HSPG2P98160 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 PP12613-201ENST00000424958 2230 ntBASIC9.7□□□□□ -0.86
HSPG2P98160 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC9.7□□□□□ -0.86
HSPG2P98160 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC9.7□□□□□ -0.86
HSPG2P98160 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
HSPG2P98160 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 AC100850.1-201ENST00000506768 649 ntBASIC9.7□□□□□ -0.86
HSPG2P98160 MARK2P5-201ENST00000507649 634 ntBASIC9.7□□□□□ -0.86
HSPG2P98160 AC013355.1-201ENST00000562625 723 ntBASIC9.7□□□□□ -0.86
HSPG2P98160 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC9.7□□□□□ -0.86
HSPG2P98160 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
HSPG2P98160 AC068587.8-201ENST00000641239 219 ntBASIC9.7□□□□□ -0.86
HSPG2P98160 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC9.7□□□□□ -0.86
HSPG2P98160 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC9.7□□□□□ -0.86
HSPG2P98160 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC9.7□□□□□ -0.86
HSPG2P98160 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 AC074138.1-201ENST00000611182 1303 ntBASIC9.69□□□□□ -0.86
HSPG2P98160 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC9.69□□□□□ -0.86
HSPG2P98160 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
HSPG2P98160 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 BRI3P1-201ENST00000440440 378 ntBASIC9.69□□□□□ -0.86
HSPG2P98160 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC9.69□□□□□ -0.86
HSPG2P98160 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC9.69□□□□□ -0.86
HSPG2P98160 AC051619.9-201ENST00000623237 597 ntBASIC9.69□□□□□ -0.86
HSPG2P98160 PCGF3-213ENST00000620529 1899 ntBASIC9.69□□□□□ -0.86
HSPG2P98160 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 AL138799.1-201ENST00000448213 1675 ntBASIC9.69□□□□□ -0.86
HSPG2P98160 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC9.69□□□□□ -0.86
HSPG2P98160 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 SUN1-204ENST00000403868 978 ntTSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC9.69□□□□□ -0.86
HSPG2P98160 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 BNIP3P1-202ENST00000550043 1585 ntBASIC9.69□□□□□ -0.86
HSPG2P98160 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
HSPG2P98160 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms