Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 KRT8P44-201ENST00000441609 1350 ntBASIC13.84□□□□□ -0.19
ABCA4P78363 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 TUBB1P2-201ENST00000422712 1306 ntBASIC13.84□□□□□ -0.19
ABCA4P78363 TUBB1P1-201ENST00000503144 1300 ntBASIC13.84□□□□□ -0.19
ABCA4P78363 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.84□□□□□ -0.19
ABCA4P78363 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.84□□□□□ -0.19
ABCA4P78363 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 AC025048.3-201ENST00000590609 569 ntBASIC13.84□□□□□ -0.19
ABCA4P78363 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 MIR6775-201ENST00000617557 69 ntBASIC13.84□□□□□ -0.19
ABCA4P78363 AC005702.4-201ENST00000618393 416 ntBASIC13.84□□□□□ -0.19
ABCA4P78363 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
ABCA4P78363 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
ABCA4P78363 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC13.83□□□□□ -0.19
ABCA4P78363 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
ABCA4P78363 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.83□□□□□ -0.19
ABCA4P78363 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
ABCA4P78363 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.19
ABCA4P78363 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.83□□□□□ -0.19
ABCA4P78363 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
ABCA4P78363 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.83□□□□□ -0.2
ABCA4P78363 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.83□□□□□ -0.2
ABCA4P78363 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.83□□□□□ -0.2
ABCA4P78363 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.83□□□□□ -0.2
ABCA4P78363 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
ABCA4P78363 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC13.83□□□□□ -0.2
ABCA4P78363 AL139099.5-201ENST00000635274 300 ntBASIC13.83□□□□□ -0.2
ABCA4P78363 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
ABCA4P78363 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
ABCA4P78363 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.83□□□□□ -0.2
ABCA4P78363 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC13.83□□□□□ -0.2
ABCA4P78363 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC13.83□□□□□ -0.2
ABCA4P78363 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC13.83□□□□□ -0.2
ABCA4P78363 AC020907.1-201ENST00000616460 1350 ntBASIC13.83□□□□□ -0.2
ABCA4P78363 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
ABCA4P78363 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.83□□□□□ -0.2
ABCA4P78363 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.83□□□□□ -0.2
ABCA4P78363 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 GGT3P-204ENST00000453783 1664 ntBASIC13.83□□□□□ -0.2
ABCA4P78363 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
ABCA4P78363 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
ABCA4P78363 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
ABCA4P78363 HAUS4P1-201ENST00000406739 1145 ntBASIC13.83□□□□□ -0.2
ABCA4P78363 TOMM22P5-201ENST00000416399 439 ntBASIC13.83□□□□□ -0.2
ABCA4P78363 AL355994.2-201ENST00000447882 704 ntBASIC13.83□□□□□ -0.2
ABCA4P78363 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.83□□□□□ -0.2
ABCA4P78363 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.83□□□□□ -0.2
ABCA4P78363 PPA1-206ENST00000625364 644 ntTSL 5 BASIC13.83□□□□□ -0.2
ABCA4P78363 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.83□□□□□ -0.2
ABCA4P78363 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
ABCA4P78363 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.83□□□□□ -0.2
ABCA4P78363 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
ABCA4P78363 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.82□□□□□ -0.2
ABCA4P78363 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
ABCA4P78363 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
ABCA4P78363 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
ABCA4P78363 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.82□□□□□ -0.2
ABCA4P78363 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
ABCA4P78363 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms