Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 AC016027.1-202ENST00000607927 1699 ntBASIC13.79□□□□□ -0.2
SDCBPO00560 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.78□□□□□ -0.2
SDCBPO00560 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.78□□□□□ -0.2
SDCBPO00560 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.78□□□□□ -0.2
SDCBPO00560 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
SDCBPO00560 AL160237.2-201ENST00000556165 472 ntBASIC13.78□□□□□ -0.2
SDCBPO00560 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.78□□□□□ -0.2
SDCBPO00560 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 CYP51A1P2-201ENST00000419457 1499 ntBASIC13.78□□□□□ -0.2
SDCBPO00560 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
SDCBPO00560 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.78□□□□□ -0.2
SDCBPO00560 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.78□□□□□ -0.2
SDCBPO00560 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
SDCBPO00560 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SDCBPO00560 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SDCBPO00560 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
SDCBPO00560 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
SDCBPO00560 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.77□□□□□ -0.2
SDCBPO00560 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
SDCBPO00560 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.77□□□□□ -0.2
SDCBPO00560 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SDCBPO00560 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
SDCBPO00560 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
SDCBPO00560 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.2
SDCBPO00560 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SDCBPO00560 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
SDCBPO00560 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.77□□□□□ -0.21
SDCBPO00560 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 AC108751.1-201ENST00000490852 363 ntBASIC13.77□□□□□ -0.21
SDCBPO00560 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC13.77□□□□□ -0.21
SDCBPO00560 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC13.77□□□□□ -0.21
SDCBPO00560 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.77□□□□□ -0.21
SDCBPO00560 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC13.77□□□□□ -0.21
SDCBPO00560 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
SDCBPO00560 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.77□□□□□ -0.21
SDCBPO00560 SSR4P1-203ENST00000599569 2260 ntBASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms