Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 STARD13-205ENST00000439831 945 ntTSL 2 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 POU5F1P6-201ENST00000466990 990 ntBASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 SART3-203ENST00000546611 1184 ntBASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 CYP2A7P1-201ENST00000595391 815 ntBASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 AL355877.3-201ENST00000622820 899 ntBASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 AC126335.2-201ENST00000623362 4637 ntBASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 HCG4P8-203ENST00000443049 980 ntBASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 IRF8-202ENST00000562492 946 ntTSL 3 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 PRELID1P1-202ENST00000567272 903 ntBASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 MIR4492-201ENST00000581627 80 ntBASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 AC006557.2-201ENST00000592985 1240 ntBASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 LINC01144-201ENST00000626198 1710 ntBASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 AL353732.1-201ENST00000569618 1459 ntBASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHMP1AQ9HD42 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 GPAA1P2-202ENST00000606848 1787 ntBASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHMP1AQ9HD42 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms