Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 DUX4L27-201ENST00000554796 1261 ntBASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 AC026979.3-201ENST00000607315 403 ntBASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 RN7SL828P-201ENST00000607615 303 ntBASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM39Q9HCM9 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 AC245100.5-201ENST00000452108 331 ntBASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 AC069120.2-201ENST00000524091 540 ntBASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM39Q9HCM9 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 AC063926.3-201ENST00000624734 5658 ntBASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 AC006449.6-201ENST00000612330 2296 ntBASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
TRIM39Q9HCM9 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM39Q9HCM9 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms