Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 AP3S2-216ENST00000617003 1561 ntBASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 TSPY26P-202ENST00000565928 3884 ntBASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 AC073439.1-201ENST00000624121 1774 ntBASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 AL512638.1-201ENST00000457493 794 ntBASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 AC073389.1-201ENST00000595595 795 ntBASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 AC018529.1-201ENST00000613063 361 ntBASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 AL390754.1-201ENST00000619088 582 ntBASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CLIP3Q96DZ5 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLIP3Q96DZ5 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms