Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KRT18P55-202ENST00000578578 1546 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ACTG1P4-201ENST00000425123 1122 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 KRT8P23-201ENST00000560090 1207 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC139749.1-202ENST00000617529 3139 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC140878.1-201ENST00000565277 250 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 USP28-214ENST00000545540 3431 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 GNAQP1-201ENST00000444815 1067 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC105233.2-201ENST00000523697 349 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AF228730.5-201ENST00000530288 346 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SPDYE22P-201ENST00000582158 798 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC008267.7-201ENST00000624570 1194 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NRXN1-233ENST00000630543 4500 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AP001094.4-201ENST00000579008 2176 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PGR-209ENST00000617858 2816 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 BANP-227ENST00000626016 2144 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms