Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.03■□□□□ 0.64
SYNE3Q6ZMZ3 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 AC245100.5-201ENST00000452108 331 ntBASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.02■□□□□ 0.64
SYNE3Q6ZMZ3 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.02■□□□□ 0.63
SYNE3Q6ZMZ3 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SYNE3Q6ZMZ3 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SYNE3Q6ZMZ3 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SYNE3Q6ZMZ3 AP3S2-216ENST00000617003 1561 ntBASIC19.02■□□□□ 0.63
SYNE3Q6ZMZ3 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SYNE3Q6ZMZ3 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 AC022188.1-201ENST00000620960 1664 ntBASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 HAUS4P1-201ENST00000406739 1145 ntBASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 FAM58DP-201ENST00000428076 619 ntBASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 DNAJB3-202ENST00000449667 1266 ntBASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 AC023141.5-201ENST00000458585 616 ntBASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 AC093520.2-201ENST00000561830 333 ntBASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SYNE3Q6ZMZ3 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 RBPMS2P1-201ENST00000437762 623 ntBASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 ALG1L8P-201ENST00000533887 760 ntBASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 RARRES2P9-201ENST00000565168 469 ntBASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 AC061975.2-201ENST00000581722 295 ntBASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 CICP6-201ENST00000457191 2729 ntBASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms