Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA1P55317 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
FOXA1P55317 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 AC009090.5-201ENST00000624886 2285 ntBASIC15.63■□□□□ 0.09
FOXA1P55317 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.62■□□□□ 0.09
FOXA1P55317 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
FOXA1P55317 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA1P55317 AC018892.3-201ENST00000623986 2499 ntBASIC15.62■□□□□ 0.09
FOXA1P55317 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.62■□□□□ 0.09
FOXA1P55317 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA1P55317 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
FOXA1P55317 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA1P55317 AC068137.2-201ENST00000605408 478 ntBASIC15.62■□□□□ 0.09
FOXA1P55317 AC099522.2-201ENST00000607001 744 ntBASIC15.62■□□□□ 0.09
FOXA1P55317 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA1P55317 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 AC023157.3-201ENST00000619086 2088 ntBASIC15.62■□□□□ 0.09
FOXA1P55317 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
FOXA1P55317 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA1P55317 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
FOXA1P55317 FOXO1B-201ENST00000504678 1527 ntBASIC15.62■□□□□ 0.09
FOXA1P55317 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.62■□□□□ 0.09
FOXA1P55317 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.62■□□□□ 0.09
FOXA1P55317 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 AC006486.2-201ENST00000624246 2199 ntBASIC15.62■□□□□ 0.09
FOXA1P55317 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
FOXA1P55317 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA1P55317 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
FOXA1P55317 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.61■□□□□ 0.09
FOXA1P55317 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
FOXA1P55317 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 AC105250.1-201ENST00000509378 2057 ntBASIC15.61■□□□□ 0.09
FOXA1P55317 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.61■□□□□ 0.09
FOXA1P55317 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
FOXA1P55317 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
FOXA1P55317 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
FOXA1P55317 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 AC090616.6-203ENST00000579186 1945 ntBASIC15.61■□□□□ 0.09
FOXA1P55317 AP001282.1-201ENST00000531301 1499 ntBASIC15.61■□□□□ 0.09
FOXA1P55317 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
FOXA1P55317 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.61■□□□□ 0.09
FOXA1P55317 RPL13AP23-201ENST00000480739 586 ntBASIC15.61■□□□□ 0.09
FOXA1P55317 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.61■□□□□ 0.09
FOXA1P55317 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
FOXA1P55317 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.61■□□□□ 0.09
FOXA1P55317 PDPK2P-202ENST00000562415 1191 ntBASIC15.61■□□□□ 0.09
FOXA1P55317 AC092865.6-201ENST00000642101 219 ntBASIC15.61■□□□□ 0.09
FOXA1P55317 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA1P55317 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA1P55317 AL109954.1-202ENST00000564051 2148 ntBASIC15.61■□□□□ 0.09
FOXA1P55317 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.61■□□□□ 0.09
FOXA1P55317 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA1P55317 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms