Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL4A4P53420 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.94■□□□□ 0.3
COL4A4P53420 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.93■□□□□ 0.3
COL4A4P53420 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A4P53420 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
COL4A4P53420 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
COL4A4P53420 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A4P53420 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
COL4A4P53420 C1QBPP1-201ENST00000400117 770 ntBASIC16.93■□□□□ 0.3
COL4A4P53420 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.93■□□□□ 0.3
COL4A4P53420 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A4P53420 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.93■□□□□ 0.3
COL4A4P53420 CLUHP6-201ENST00000580789 941 ntBASIC16.93■□□□□ 0.3
COL4A4P53420 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.93■□□□□ 0.3
COL4A4P53420 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.93■□□□□ 0.3
COL4A4P53420 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A4P53420 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A4P53420 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
COL4A4P53420 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.93■□□□□ 0.3
COL4A4P53420 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A4P53420 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
COL4A4P53420 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.93■□□□□ 0.3
COL4A4P53420 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 CNN2P8-201ENST00000421872 913 ntBASIC16.92■□□□□ 0.3
COL4A4P53420 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.92■□□□□ 0.3
COL4A4P53420 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.92■□□□□ 0.3
COL4A4P53420 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.92■□□□□ 0.3
COL4A4P53420 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
COL4A4P53420 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.92■□□□□ 0.3
COL4A4P53420 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.92■□□□□ 0.3
COL4A4P53420 AC107373.2-201ENST00000607735 490 ntBASIC16.92■□□□□ 0.3
COL4A4P53420 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.92■□□□□ 0.3
COL4A4P53420 AC015967.2-201ENST00000624092 234 ntBASIC16.92■□□□□ 0.3
COL4A4P53420 AC006435.4-201ENST00000625037 234 ntBASIC16.92■□□□□ 0.3
COL4A4P53420 AL356737.1-201ENST00000634391 234 ntBASIC16.92■□□□□ 0.3
COL4A4P53420 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.92■□□□□ 0.3
COL4A4P53420 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
COL4A4P53420 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
COL4A4P53420 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.92■□□□□ 0.3
COL4A4P53420 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.92■□□□□ 0.3
COL4A4P53420 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
COL4A4P53420 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL4A4P53420 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A4P53420 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.91■□□□□ 0.3
COL4A4P53420 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
COL4A4P53420 HINT2P1-201ENST00000419438 481 ntBASIC16.91■□□□□ 0.3
COL4A4P53420 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.91■□□□□ 0.3
COL4A4P53420 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.91■□□□□ 0.3
COL4A4P53420 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.91■□□□□ 0.3
COL4A4P53420 SCARNA20.5-201ENST00000516991 142 ntBASIC16.91■□□□□ 0.3
COL4A4P53420 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.91■□□□□ 0.3
COL4A4P53420 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.91■□□□□ 0.3
COL4A4P53420 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
COL4A4P53420 AC091271.1-201ENST00000611877 1162 ntBASIC16.91■□□□□ 0.3
COL4A4P53420 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms