Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SSR1P43307 PMS2P4-201ENST00000412466 1052 ntBASIC17.26■□□□□ 0.35
SSR1P43307 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.26■□□□□ 0.35
SSR1P43307 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.26■□□□□ 0.35
SSR1P43307 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.26■□□□□ 0.35
SSR1P43307 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.26■□□□□ 0.35
SSR1P43307 AC023141.13-201ENST00000604991 943 ntBASIC17.26■□□□□ 0.35
SSR1P43307 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.26■□□□□ 0.35
SSR1P43307 AC007064.4-201ENST00000637740 555 ntBASIC17.26■□□□□ 0.35
SSR1P43307 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.26■□□□□ 0.35
SSR1P43307 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.26■□□□□ 0.35
SSR1P43307 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 LINC02228-204ENST00000642115 2962 ntBASIC17.26■□□□□ 0.35
SSR1P43307 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SSR1P43307 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
SSR1P43307 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
SSR1P43307 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SSR1P43307 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.26■□□□□ 0.35
SSR1P43307 AC022188.1-201ENST00000620960 1664 ntBASIC17.26■□□□□ 0.35
SSR1P43307 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSR1P43307 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SSR1P43307 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SSR1P43307 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.25■□□□□ 0.35
SSR1P43307 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.25■□□□□ 0.35
SSR1P43307 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
SSR1P43307 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.25■□□□□ 0.35
SSR1P43307 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.25■□□□□ 0.35
SSR1P43307 AC007967.2-201ENST00000432613 625 ntBASIC17.25■□□□□ 0.35
SSR1P43307 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.25■□□□□ 0.35
SSR1P43307 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC17.25■□□□□ 0.35
SSR1P43307 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.25■□□□□ 0.35
SSR1P43307 AC096734.2-201ENST00000562054 433 ntBASIC17.25■□□□□ 0.35
SSR1P43307 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.25■□□□□ 0.35
SSR1P43307 AC018845.2-201ENST00000568326 409 ntBASIC17.25■□□□□ 0.35
SSR1P43307 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.25■□□□□ 0.35
SSR1P43307 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.25■□□□□ 0.35
SSR1P43307 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.25■□□□□ 0.35
SSR1P43307 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.25■□□□□ 0.35
SSR1P43307 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.25■□□□□ 0.35
SSR1P43307 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
SSR1P43307 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 AL365203.3-201ENST00000609742 2057 ntBASIC17.25■□□□□ 0.35
SSR1P43307 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSR1P43307 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.25■□□□□ 0.35
SSR1P43307 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.25■□□□□ 0.35
SSR1P43307 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.24■□□□□ 0.35
SSR1P43307 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SSR1P43307 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SSR1P43307 BCAR1-209ENST00000546196 1340 ntBASIC17.24■□□□□ 0.35
SSR1P43307 MYO15B-237ENST00000642007 4893 ntBASIC17.24■□□□□ 0.35
SSR1P43307 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SSR1P43307 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SSR1P43307 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.24■□□□□ 0.35
SSR1P43307 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.24■□□□□ 0.35
SSR1P43307 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.24■□□□□ 0.35
SSR1P43307 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
SSR1P43307 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SSR1P43307 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.24■□□□□ 0.35
SSR1P43307 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.24■□□□□ 0.35
SSR1P43307 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
SSR1P43307 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.24■□□□□ 0.35
SSR1P43307 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.24■□□□□ 0.35
SSR1P43307 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.24■□□□□ 0.35
SSR1P43307 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.24■□□□□ 0.35
SSR1P43307 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SSR1P43307 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSR1P43307 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SSR1P43307 AP002414.2-201ENST00000591780 3365 ntBASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms