Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SOX3P41225 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SOX3P41225 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.24■□□□□ 0.03
SOX3P41225 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.24■□□□□ 0.03
SOX3P41225 HLA-J-203ENST00000494367 1087 ntBASIC15.24■□□□□ 0.03
SOX3P41225 AC109322.1-201ENST00000524499 1264 ntBASIC15.24■□□□□ 0.03
SOX3P41225 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.24■□□□□ 0.03
SOX3P41225 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.24■□□□□ 0.03
SOX3P41225 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.24■□□□□ 0.03
SOX3P41225 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.24■□□□□ 0.03
SOX3P41225 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SOX3P41225 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX3P41225 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
SOX3P41225 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.23■□□□□ 0.03
SOX3P41225 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
SOX3P41225 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.23■□□□□ 0.03
SOX3P41225 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.23■□□□□ 0.03
SOX3P41225 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX3P41225 AL136379.1-201ENST00000623471 2642 ntBASIC15.23■□□□□ 0.03
SOX3P41225 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX3P41225 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX3P41225 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX3P41225 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SOX3P41225 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.23■□□□□ 0.03
SOX3P41225 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.23■□□□□ 0.03
SOX3P41225 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.23■□□□□ 0.03
SOX3P41225 AP000842.3-202ENST00000569238 1080 ntBASIC15.23■□□□□ 0.03
SOX3P41225 AC027796.2-201ENST00000575326 344 ntBASIC15.23■□□□□ 0.03
SOX3P41225 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.23■□□□□ 0.03
SOX3P41225 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.23■□□□□ 0.03
SOX3P41225 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
SOX3P41225 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX3P41225 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.23■□□□□ 0.03
SOX3P41225 ME2P1-201ENST00000426028 1970 ntBASIC15.23■□□□□ 0.03
SOX3P41225 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.23■□□□□ 0.03
SOX3P41225 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX3P41225 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.23■□□□□ 0.03
SOX3P41225 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX3P41225 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 AC006538.1-201ENST00000567905 1585 ntBASIC15.23■□□□□ 0.03
SOX3P41225 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX3P41225 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX3P41225 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms