Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
ABCD3P28288 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.88□□□□□ -0.03
ABCD3P28288 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
ABCD3P28288 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
ABCD3P28288 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
ABCD3P28288 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
ABCD3P28288 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
ABCD3P28288 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.88□□□□□ -0.03
ABCD3P28288 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.88□□□□□ -0.03
ABCD3P28288 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.88□□□□□ -0.03
ABCD3P28288 MTND6P24-201ENST00000440466 518 ntBASIC14.88□□□□□ -0.03
ABCD3P28288 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.88□□□□□ -0.03
ABCD3P28288 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.88□□□□□ -0.03
ABCD3P28288 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.88□□□□□ -0.03
ABCD3P28288 AC140878.1-201ENST00000565277 250 ntBASIC14.88□□□□□ -0.03
ABCD3P28288 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.88□□□□□ -0.03
ABCD3P28288 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
ABCD3P28288 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.88□□□□□ -0.03
ABCD3P28288 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
ABCD3P28288 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.88□□□□□ -0.03
ABCD3P28288 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
ABCD3P28288 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.87□□□□□ -0.03
ABCD3P28288 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
ABCD3P28288 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.87□□□□□ -0.03
ABCD3P28288 AL136982.4-201ENST00000437689 1740 ntBASIC14.87□□□□□ -0.03
ABCD3P28288 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
ABCD3P28288 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
ABCD3P28288 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.87□□□□□ -0.03
ABCD3P28288 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.87□□□□□ -0.03
ABCD3P28288 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.87□□□□□ -0.03
ABCD3P28288 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.87□□□□□ -0.03
ABCD3P28288 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.87□□□□□ -0.03
ABCD3P28288 AC093512.1-201ENST00000617969 520 ntBASIC14.87□□□□□ -0.03
ABCD3P28288 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.87□□□□□ -0.03
ABCD3P28288 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.87□□□□□ -0.03
ABCD3P28288 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 DOC2GP-204ENST00000639052 2548 ntBASIC14.87□□□□□ -0.03
ABCD3P28288 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.87□□□□□ -0.03
ABCD3P28288 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.87□□□□□ -0.03
ABCD3P28288 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCD3P28288 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
ABCD3P28288 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.86□□□□□ -0.03
ABCD3P28288 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.86□□□□□ -0.03
ABCD3P28288 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 AL691432.1-201ENST00000596308 1422 ntBASIC14.86□□□□□ -0.03
ABCD3P28288 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.86□□□□□ -0.03
ABCD3P28288 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.86□□□□□ -0.03
ABCD3P28288 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.86□□□□□ -0.03
ABCD3P28288 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 CYMP-203ENST00000474680 1263 ntBASIC14.86□□□□□ -0.03
ABCD3P28288 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCD3P28288 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.86□□□□□ -0.03
ABCD3P28288 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms