Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 AC138035.3-201ENST00000622706 2791 ntBASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 AC018712.1-201ENST00000455767 687 ntBASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 AC011477.6-201ENST00000604980 1927 ntBASIC16.21■□□□□ 0.19
TRIM49D1C9J1S8 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM49D1C9J1S8 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 AC099063.4-201ENST00000641099 1602 ntBASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 FAM197Y8-203ENST00000450145 560 ntBASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 AC245100.5-201ENST00000452108 331 ntBASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 MIR4751-201ENST00000578027 74 ntBASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 AC117500.6-201ENST00000624871 588 ntBASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM49D1C9J1S8 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 AL136379.1-201ENST00000623471 2642 ntBASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms