Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
LHX3Q9UBR4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 AC044860.1-202ENST00000559481 777 ntBASIC16.19■□□□□ 0.18
LHX3Q9UBR4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.19■□□□□ 0.18
LHX3Q9UBR4 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LHX3Q9UBR4 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.18■□□□□ 0.18
LHX3Q9UBR4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 MIR661-201ENST00000384842 89 ntBASIC16.18■□□□□ 0.18
LHX3Q9UBR4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 PHKG1P2-201ENST00000457537 863 ntBASIC16.18■□□□□ 0.18
LHX3Q9UBR4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 AC025048.3-201ENST00000590609 569 ntBASIC16.18■□□□□ 0.18
LHX3Q9UBR4 AC005702.4-201ENST00000618393 416 ntBASIC16.18■□□□□ 0.18
LHX3Q9UBR4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 AC018892.3-201ENST00000623986 2499 ntBASIC16.18■□□□□ 0.18
LHX3Q9UBR4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LHX3Q9UBR4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 AC010491.1-201ENST00000563101 2797 ntBASIC16.17■□□□□ 0.18
LHX3Q9UBR4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.17■□□□□ 0.18
LHX3Q9UBR4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms