Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 AC136604.1-201ENST00000418535 575 ntBASIC17.92■□□□□ 0.46
VTA1Q9NP79 KRT223P-202ENST00000449164 1292 ntBASIC17.92■□□□□ 0.46
VTA1Q9NP79 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 SNX29P1-201ENST00000548357 1007 ntBASIC17.92■□□□□ 0.46
VTA1Q9NP79 MIR4259-201ENST00000584466 101 ntBASIC17.92■□□□□ 0.46
VTA1Q9NP79 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 AC233724.13-201ENST00000598383 410 ntBASIC17.92■□□□□ 0.46
VTA1Q9NP79 AC133552.6-201ENST00000613406 534 ntBASIC17.92■□□□□ 0.46
VTA1Q9NP79 MIR6775-201ENST00000617557 69 ntBASIC17.92■□□□□ 0.46
VTA1Q9NP79 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.92■□□□□ 0.46
VTA1Q9NP79 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 ACTG1P3-201ENST00000431775 1114 ntBASIC17.91■□□□□ 0.46
VTA1Q9NP79 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 CROCCP4-201ENST00000457096 498 ntBASIC17.91■□□□□ 0.46
VTA1Q9NP79 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 MIR5189-201ENST00000577370 114 ntBASIC17.91■□□□□ 0.46
VTA1Q9NP79 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.91■□□□□ 0.46
VTA1Q9NP79 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VTA1Q9NP79 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 KRT18P64-201ENST00000434946 1219 ntBASIC17.9■□□□□ 0.46
VTA1Q9NP79 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 RPL13AP25-201ENST00000484130 612 ntBASIC17.9■□□□□ 0.46
VTA1Q9NP79 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 AC104989.1-201ENST00000519711 778 ntBASIC17.9■□□□□ 0.46
VTA1Q9NP79 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 AL359711.2-201ENST00000563105 872 ntBASIC17.9■□□□□ 0.46
VTA1Q9NP79 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 AL450472.2-201ENST00000603663 1156 ntBASIC17.9■□□□□ 0.46
VTA1Q9NP79 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 AC018665.1-201ENST00000622927 1362 ntBASIC17.9■□□□□ 0.46
VTA1Q9NP79 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VTA1Q9NP79 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VTA1Q9NP79 REXO1L1P-202ENST00000608646 1974 ntBASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms